Rust Sequence-motif Resources

A "Naive" Implementation of the Wavefront Algorithm for Sequence Alignment with Gap-Affine Scoring This repository contains some simple code that I wr

🎼 🧬 lightmotif A lightweight platform-accelerated library for biological motif scanning using position weight matrices. 🗺️ Overview Motif scanning

Mehari Mehari is a software package for annotating VCF files with variant effect/consequence. The program uses hgvs-rs for projecting genomic variants

Rust-parallelfastx A truly parallel parser for FASTA/FASTQ files. Principle The input file is memory-mapped then virtually split into N chunks. Each c

Context Tree Weighting (CTW) CTW is a lightweight, practical and well performing sequence prediction algorithm discovered by Frans Willems, Yuri Shtar

Library containing implementations of various sequential data-structures.

fractal-hash-traversal An implementation of Jakobsson's Fractal Hash Sequence Traversal algorithm. There is at least one hash traversal algorithm that

SyntaxDot Introduction SyntaxDot is a sequence labeler and dependency parser using Transformer networks. SyntaxDot models can be trained from scratch

Native cross-platform full feature terminal-based sequence editor for git interactive rebase.

Fibora Port of fibonacci-deno for Rust. Utilities for the Fibonacci Number and Sequence. Usage This package exposes two Functions, fibonacci and fibon

Sobol-Burley A seedable Owen-scrambled Sobol sequence based on the paper Practical Hash-based Owen Scrambling by Brent Burley, but with an improved ha

diagwiz -- ASCII diagrams as code Warning: This project is in early experimental stage. Functionality is subject to change and YMMV. Feel free to open

bottom encodes UTF-8 text into a sequence comprised of bottom emoji (with , sprinkled in for good measure) followed by 👉👈. It can encode any valid UTF-8 - being a bottom transcends language, after all - and decode back into UTF-8.