14 Repositories
Rust sequence-labels Libraries
A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
A "Naive" Implementation of the Wavefront Algorithm for Sequence Alignment with Gap-Affine Scoring This repository contains some simple code that I wr
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
🎼 🧬 lightmotif A lightweight platform-accelerated library for biological motif scanning using position weight matrices. 🗺️ Overview Motif scanning
VEP-like tool for sequence ontology and HGVS annotation of VCF files
Mehari Mehari is a software package for annotating VCF files with variant effect/consequence. The program uses hgvs-rs for projecting genomic variants
Parallel iteration of FASTA/FASTQ files, for when sequence order doesn't matter but speed does
Rust-parallelfastx A truly parallel parser for FASTA/FASTQ files. Principle The input file is memory-mapped then virtually split into N chunks. Each c
An Implementation of the Context Tree Weighting (CTW) Sequence Prediction Algorithm
Context Tree Weighting (CTW) CTW is a lightweight, practical and well performing sequence prediction algorithm discovered by Frans Willems, Yuri Shtar
Library containing implementations of various sequential data-structures.
Library containing implementations of various sequential data-structures.
An implementation of Jakobsson's Fractal Hash Sequence Traversal algorithm
fractal-hash-traversal An implementation of Jakobsson's Fractal Hash Sequence Traversal algorithm. There is at least one hash traversal algorithm that
Neural syntax annotator, supporting sequence labeling, lemmatization, and dependency parsing.
SyntaxDot Introduction SyntaxDot is a sequence labeler and dependency parser using Transformer networks. SyntaxDot models can be trained from scratch
A cli utility written in Rust that allows fetching all the labels of a project, save those as a YAML file
A cli utility written in Rust that allows fetching all the labels of a project, save those as a YAML file that you can easily edit or save as backup and apply a saved preset to new repositories.
Native cross-platform full feature terminal-based sequence editor for git interactive rebase.
Native cross-platform full feature terminal-based sequence editor for git interactive rebase.
📘 Utilities for the Fibonacci Number and Sequence
Fibora Port of fibonacci-deno for Rust. Utilities for the Fibonacci Number and Sequence. Usage This package exposes two Functions, fibonacci and fibon
A seedable Owen-scrambled Sobol sequence.
Sobol-Burley A seedable Owen-scrambled Sobol sequence based on the paper Practical Hash-based Owen Scrambling by Brent Burley, but with an improved ha
Diagrams as code
diagwiz -- ASCII diagrams as code Warning: This project is in early experimental stage. Functionality is subject to change and YMMV. Feel free to open
bottom encodes UTF-8 text into a sequence comprised of bottom emoji
bottom encodes UTF-8 text into a sequence comprised of bottom emoji (with , sprinkled in for good measure) followed by 👉👈. It can encode any valid UTF-8 - being a bottom transcends language, after all - and decode back into UTF-8.