5 Repositories
Rust genomics Libraries
VCF/BCF [un]compressed [un]indexed
This is a small library that attempts to allow efficient reading of VCF and BCF files that are either compressed or uncompressed and indexed or not. n
6 Sep 24, 2023
Read specialized NGS formats as data frames in R, Python, and more.
oxbow Read specialized bioinformatic file formats as data frames in R, Python, and more. File formats create a lot of friction for computational biolo
12 Jun 7, 2023
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
🎼 🧬 lightmotif A lightweight platform-accelerated library for biological motif scanning using position weight matrices. 🗺️ Overview Motif scanning
16 May 4, 2023
Common utilities code used across Fulcrum Genomics Rust projects
fgoxide Common utilities code used across Fulcrum Genomics Rust projects. Why? There are many helper functions that are used repeatedly across project
2 Nov 2, 2022
Bioinformatics tool for counting guides in CRISPR-screen studies.
guide-counter A better, faster way to count guides in CRISPR screens. Overview guide-counter is a tool for processing FASTQ files from CRISPR screen e
21 Oct 17, 2022