Rust Genome-annotation Resources

gxf2bed The fastest G{F,T}F-to-BED converter around the block! translates chr27 gxf2bed gene 17266470 17285418 . + . gene_id "ENSG00000151743"; chr27

bed2gff A Rust BED-to-GFF3 translator. translates chr7 56766360 56805692 ENST00000581852.25 1000 + 56766360 56805692 0,0,200 3 3,135,81, 0,496,39251,

Satty Satty - a Screenshot Annotation Tool inspired by Swappy and Flameshot. Install You can get the official Arch Linux package from the AUR: yay -S

Core-SNP-filter This is a tool to filter sites (i.e. columns) in a FASTA-format whole-genome pseudo-alignment based on: Whether the site contains vari

Mehari Mehari is a software package for annotating VCF files with variant effect/consequence. The program uses hgvs-rs for projecting genomic variants

Quickner ⚡ A simple, fast, and easy to use NER annotator for Python Quickner is a new tool to quickly annotate texts for NER (Named Entity Recognition

STAM Library STAM is a data model for stand-off text annotation and described in detail here. This is a sofware library to work with the model, writte

vircov Minimal virus genome coverage assessment for metagenomic diagnostics Overview v0.5.0 Purpose Implementation Installation Usage Tests Concept Cl

Focus Annotator Focus Annotator is a tool for annotation the focal plane of a part of an image. It is a tool I built in rust as part of my master's th

crdt-genome Synopsis Experiments with Rust CRDTs using Tokio web application framework Axum. Background Exploring some ideas of Martin Kleppmann, part

Annotation to easily define ad-hoc / one-shot extension traits