8 Repositories
Rust gene-annotation Libraries
Fastest GTF/GFF-to-BED converter chilling around
gxf2bed The fastest G{F,T}F-to-BED converter around the block! translates chr27 gxf2bed gene 17266470 17285418 . + . gene_id "ENSG00000151743"; chr27
11 Feb 20, 2024
A Rust BED-to-GFF3 translator
bed2gff A Rust BED-to-GFF3 translator. translates chr7 56766360 56805692 ENST00000581852.25 1000 + 56766360 56805692 0,0,200 3 3,135,81, 0,496,39251,
3 Oct 5, 2023
Satty - a Screenshot Annotation Tool inspired by Swappy and Flameshot
Satty Satty - a Screenshot Annotation Tool inspired by Swappy and Flameshot. Install You can get the official Arch Linux package from the AUR: yay -S
22 Oct 10, 2023
VEP-like tool for sequence ontology and HGVS annotation of VCF files
Mehari Mehari is a software package for annotating VCF files with variant effect/consequence. The program uses hgvs-rs for projecting genomic variants
5 Mar 31, 2023
Quickner is a new tool to quickly annotate texts for NER (Named Entity Recognition). It is written in Rust and accessible through a Python API.
Quickner ⚡ A simple, fast, and easy to use NER annotator for Python Quickner is a new tool to quickly annotate texts for NER (Named Entity Recognition
7 Mar 3, 2023
Library for the Standoff Text Annotation Model, in Rust
STAM Library STAM is a data model for stand-off text annotation and described in detail here. This is a sofware library to work with the model, writte
3 Jan 11, 2023
Focus Annotator - a tool for annotation the focal plane of a part of an image
Focus Annotator Focus Annotator is a tool for annotation the focal plane of a part of an image. It is a tool I built in rust as part of my master's th
17 Sep 27, 2022
Annotation to easily define ad-hoc / one-shot extension traits
Annotation to easily define ad-hoc / one-shot extension traits
2 Apr 19, 2022