3 Repositories
Rust fastq Libraries
Parallel iteration of FASTA/FASTQ files, for when sequence order doesn't matter but speed does
Rust-parallelfastx A truly parallel parser for FASTA/FASTQ files. Principle The input file is memory-mapped then virtually split into N chunks. Each c
8 Oct 24, 2022
Extract subsets of ONT (Nanopore) reads based on time
ONTime Extract subsets of ONT (Nanopore) reads based on time Motivation Install Examples Usage Time range format Cite Motivation Some collaborators wa
5 Jan 17, 2023
Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from.
Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from.
7 Nov 2, 2022