Rust Fasta Resources

Kmer2sequences Description Given a set of kmers (fasta / fastq [.gz] format) and a set of sequences (fasta / fastq [.gz] format), this tool will extra

Core-SNP-filter This is a tool to filter sites (i.e. columns) in a FASTA-format whole-genome pseudo-alignment based on: Whether the site contains vari

Rust-parallelfastx A truly parallel parser for FASTA/FASTQ files. Principle The input file is memory-mapped then virtually split into N chunks. Each c

fasebare Rust crate needleman_wunsch of the fasebare package: reading FASTA sequences, Needleman-Wunsch alignment. Synopsis The crate needleman_wunsch

Compute a pairwise SNP distance matrix from one or two alignment(s) Table of Contents Motivation Install cargo conda Precompiled binaries homebrew Con

My (Max's?) Minimal Fasta Toolkit Nothing sophisticated. Minimal, simple fasta tools. It's stuff that's been done many times, but this way I can get i